Posts

Checkout the latest source codes from APSIMInitiative git clone --depth 1 https://github.com/APSIMInitiative/ApsimX.git Compile APSIMNG GUI Open ApsimX.sln under folder ApsimX with Visual Studio (2019 above), and then use menu Build -> Build Solution to build whole projects.

I have been looking for a simple and flexible tool to manage projects, take notes, and track results of data analysis with R, e.g. EverNote, OneNote, Trac, JIRA, github, RMarkdown, bookdown, etc.

Zotero is a free and open-source reference management software to manage bibliographic data and related research materials. Better BibTeX (BBT) is an extension for Zotero and Juris-M that makes it easier to manage bibliographic data.

Split apsimx into individual simulations Generate the parameter spaces and prepare the task list for parallel calculation Run all tasks in cluster to collect results Develop scripts to run individual task on HTCondor Merge simulated values of all treatments for the target cultivars.

During development the web platform PhenoCopter to process images captured by UAV, I need to capture all logs (i.e. message, warning and error) of R scripts for data processing, and then store into the database which are rendered by web interface and allows user to view all logs in real time.

The TOC is rendered underneath when using blogdown 0.20 to write Rmarkdown file. However, the current version of hugo academic theme is rendered TOC at the right hand side and always keep on the screen which would be more useful.

Correlation figure is very useful to show correlation for all variables in a data frame. There are several ways to draw a correlation plot in R. This post is to show how to create correlation plots and interactive plot in Rmarkdown.

In the PhenoCopter platform, I have to deal with the limited space in the storage of our data center. The practical solution is to archive old flights into tape and current flights in the active storage.

This page collects the common errors and possible solutions for APSIM Next Generation. Weather file Input string was not in a correct format. Latitude or longitude are missing or not numeric values in the weather file.

After development a R package and push into github, I want to build a reference website, and automatically deploy it with my sub-domain. Setup pkgdown pkgdown is an very powerful tool to make it quick and easy to build a website for R package.